WitrynaNot done yet, compare to Imaris. The below analysis was done in late 2024. It was repeated on Zeiss confocal cell culture neuron data in April 2024 and coloc2 failed to return useable answers. ... (Sum) Intensity, 1845851976.000 Channel 2 Integrated (Sum) Intensity, 1771298116.000 Mask Type Used, none Mask ID Used, … Witryna7 kwi 2024 · To define the structure and volume of the AIS as the region of interest, first, a Gaussian filter with a surface area detail level of 0.2 µm was applied (smoothing), and then, a mask of the AnkG staining was created by using the automatic background subtraction algorithm of Imaris and setting a threshold for the signal intensity.
Microscopy Image Browser 2 (MIB2) - File Exchange - MathWorks
Witryna4 gru 2024 · When analysing telomere length based on intensity sum in Imaris in 3D, Hs68 + hTERT cells were calculated to have longer telomeres when compared to … Witryna2 mar 2024 · Maximum intensity projections of whole cells were calculated using the ZENBlack software. Zoomed-in sections were presented as single slices to indicate the subnuclear chromatin structures at super-resolution. 3D rendering to produce spatial animations was performed based on SIM image stacks using the Imaris 9.6 (Bitplane) … nova shoe washer with spin
Imaris "area" and "volume" : r/labrats - Reddit
Witryna18 mar 2024 · Imaris 9.2: Bitplane: RRID:SCR_007370: LAS X: Leica Microsystems Inc: ... Sum Intensity of MCP-GFP channel, Position Z, and Distance to image border XY. False-positive spots are most often detected outside the z-plane of transcription sites with a lower sum fluorescence than the average transcription site. Witryna15 lis 2024 · Imaris 7.7.2 software was employed for visualization and quantification of colocalization. The percentage of EGFP protein colocalized with MitoTracker red was quantified by dividing the total of the intensity sum per object for the colocalized image by the total of the intensity sum per object for the EGFP image. ROS analysis Witryna12 lis 2024 · intensity_x=sum(X1); %row vector containing the sum of each column. intensity_y=sum(X1,2); %column vector containing the sum of each row. 4 … nova shootout lacrosse